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| Clasificación | En casa | Fuera de casa | 1.ª vuelta | 2.ª vuelta | » 1.ª parte | 2.ª parte |
| # | Equipo | P | V | E | D | Goles | DG | Pun. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
1. FC Union Berlin | 32 | 13 | 16 | 3 | 21:8 | 13 | 55 |
| 2 |
|
SC Paderborn 07 | 32 | 13 | 13 | 6 | 25:12 | 13 | 52 |
| 3 |
|
Kickers Emden | 32 | 13 | 13 | 6 | 20:10 | 10 | 52 |
| 4 |
|
SpVgg Unterhaching | 32 | 13 | 12 | 7 | 26:16 | 10 | 51 |
| 5 |
|
SV Sandhausen | 32 | 11 | 14 | 7 | 19:15 | 4 | 47 |
| 6 |
|
Stuttgart II | 32 | 12 | 9 | 11 | 23:16 | 7 | 45 |
| 7 |
|
Eintracht Braunschweig | 32 | 11 | 12 | 9 | 20:17 | 3 | 45 |
| 8 |
|
Rot-Weiß Erfurt | 32 | 9 | 16 | 7 | 20:15 | 5 | 43 |
| 9 |
|
Fortuna Düsseldorf | 32 | 9 | 15 | 8 | 16:14 | 2 | 42 |
| 10 |
|
Bayern Múnich II | 32 | 8 | 18 | 6 | 14:13 | 1 | 42 |
| 11 |
|
Werder Bremen II | 32 | 7 | 19 | 6 | 19:23 | -4 | 40 |
| 12 |
|
Kickers Offenbach | 32 | 8 | 15 | 9 | 11:12 | -1 | 39 |
| 13 |
|
Erzgebirge Aue | 32 | 8 | 15 | 9 | 16:18 | -2 | 39 |
| 14 |
|
Wuppertaler SV | 32 | 7 | 15 | 10 | 16:18 | -2 | 36 |
| 15 |
|
Dynamo Dresden | 32 | 5 | 18 | 9 | 18:23 | -5 | 33 |
| 16 |
|
FC Carl Zeiss Jena | 32 | 6 | 14 | 12 | 9:23 | -14 | 32 |
| 17 |
|
Wacker Burghausen | 32 | 5 | 15 | 12 | 12:20 | -8 | 30 |
| 18 |
|
Stuttgarter Kickers | 32 | 3 | 20 | 9 | 15:24 | -9 | 29 |
| 19 |
|
Jahn Regensburg | 32 | 5 | 14 | 13 | 8:19 | -11 | 29 |
| 20 |
|
VfR Aalen | 32 | 4 | 17 | 11 | 12:24 | -12 | 29 |
| Ascenso | |
| Permanencia | |
| Descenso |
