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| Clasificación | En casa | Fuera de casa | 1.ª vuelta | 2.ª vuelta | 1.ª parte | » 2.ª parte |
| # | Equipo | P | V | E | D | Goles | DG | Pun. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Eintracht Braunschweig | 35 | 16 | 12 | 7 | 31:12 | 19 | 60 |
| 2 |
|
Erzgebirge Aue | 35 | 14 | 15 | 6 | 32:21 | 11 | 57 |
| 3 |
|
FC Carl Zeiss Jena | 35 | 15 | 10 | 10 | 31:21 | 10 | 55 |
| 4 |
|
SV Sandhausen | 35 | 15 | 10 | 10 | 34:29 | 5 | 55 |
| 5 |
|
Ingolstadt | 35 | 15 | 9 | 11 | 33:27 | 6 | 54 |
| 6 |
|
VfL Osnabrück | 35 | 14 | 11 | 10 | 28:19 | 9 | 53 |
| 7 |
|
Bayern Múnich II | 35 | 13 | 14 | 8 | 29:27 | 2 | 53 |
| 8 |
|
Kickers Offenbach | 35 | 12 | 14 | 9 | 21:18 | 3 | 50 |
| 9 |
|
Rot-Weiß Erfurt | 35 | 13 | 10 | 12 | 20:21 | -1 | 49 |
| 10 |
|
1. FC Heidenheim 1846 | 35 | 11 | 13 | 11 | 35:31 | 4 | 46 |
| 11 |
|
Jahn Regensburg | 35 | 10 | 14 | 11 | 25:27 | -2 | 44 |
| 12 |
|
Werder Bremen II | 35 | 12 | 8 | 15 | 25:28 | -3 | 44 |
| 13 |
|
SpVgg Unterhaching | 35 | 12 | 8 | 15 | 22:27 | -5 | 44 |
| 14 |
|
Dynamo Dresden | 35 | 11 | 10 | 14 | 17:23 | -6 | 43 |
| 15 |
|
Wuppertaler SV | 35 | 11 | 9 | 15 | 25:36 | -11 | 42 |
| 16 |
|
Borussia Dortmund II | 35 | 10 | 10 | 15 | 21:27 | -6 | 40 |
| 17 |
|
SV Wehen Wiesbaden | 35 | 10 | 10 | 15 | 25:33 | -8 | 40 |
| 18 |
|
Stuttgart II | 35 | 11 | 7 | 17 | 22:30 | -8 | 40 |
| 19 |
|
Holstein Kiel | 35 | 8 | 13 | 14 | 26:33 | -7 | 37 |
| 20 |
|
Wacker Burghausen | 35 | 8 | 11 | 16 | 21:33 | -12 | 35 |
| Ascenso | |
| Permanencia | |
| Descenso |
