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| I | FK AP Brera Strumica | - | FK Sarajevo Academy | 2:2 (0:1) | ||
| V | FK Sarajevo Academy | - | FK AP Brera Strumica | 2:0 (0:0) | ||
| I: 17.09.2024 15:00 | V: 02.10.2024 18:00 | Campeones: FK Sarajevo Academy | ||||
| I | FK Kairat | - | Academia Rebeja Chisinau | 2:1 (1:0) | ||
| V | Academia Rebeja Chisinau | - | FK Kairat | 1:4 (0:2) | ||
| I: 18.09.2024 13:00 | V: 02.10.2024 14:00 | Campeones: FK Kairat | ||||
| I | KF Bylis Ballsh | - | KF 2 Korriku | 1:2 (0:0) | ||
| V | KF 2 Korriku | - | KF Bylis Ballsh | 2:1 (0:0) | ||
| I: 18.09.2024 16:00 | V: 02.10.2024 14:00 | Campeones: KF 2 Korriku | ||||
| I | BFC Daugavpils | - | Cliftonville FC | 1:0 (1:0) | ||
| V | Cliftonville FC | - | BFC Daugavpils | 2:4 (1:0, 2:1) pn. | ||
| I: 18.09.2024 17:00 | V: 02.10.2024 20:30 | Campeones: BFC Daugavpils | ||||
| I | Dinamo Tbilisi | - | FK Budućnost Podgorica | 3:2 (1:2) | ||
| V | FK Budućnost Podgorica | - | Dinamo Tbilisi | 4:1 (2:1) | ||
| I: 18.09.2024 17:00 | V: 02.10.2024 19:00 | Campeones: FK Budućnost Podgorica | ||||
| I | FC Honka | - | Valletta FC | 1:0 (0:0) | ||
| V | Valletta FC | - | FC Honka | 3:0 (0:1, 3:2) pn. | ||
| I: 18.09.2024 17:30 | V: 02.10.2024 19:00 | Campeones: Valletta FC | ||||
| I | FK Žalgiris | - | The New Saints | 3:2 (1:2) | ||
| V | The New Saints | - | FK Žalgiris | 0:4 (0:2) | ||
| I: 18.09.2024 18:00 | V: 01.10.2024 20:00 | Campeones: FK Žalgiris | ||||
| I | Dinamo Minsk | - | Pyunik FC | 4:2 (2:0) | ||
| V | Pyunik FC | - | Dinamo Minsk | 1:2 (0:2) | ||
| I: 18.09.2024 18:00 | V: 22.09.2024 18:00 | Campeones: Dinamo Minsk | ||||
| I | Lincoln Red Imps | - | NK Maribor | 0:6 (0:2) | ||
| V | NK Maribor | - | Lincoln Red Imps | 2:0 (1:0) | ||
| I: 18.09.2024 18:30 | V: 02.10.2024 17:00 | Campeones: NK Maribor | ||||
| I | JK Tallinna Kalev | - | FC Santa Coloma | 7:0 (3:0) | ||
| V | FC Santa Coloma | - | JK Tallinna Kalev | 0:4 (0:1) | ||
| I: 18.09.2024 18:30 | V: 02.10.2024 19:30 | Campeones: JK Tallinna Kalev | ||||
| I | HB Tórshavn | - | Progrès Niedercorn | 1:2 (0:1) | ||
| V | Progrès Niedercorn | - | HB Tórshavn | 3:0 (2:0) | ||
| I: 18.09.2024 20:00 | V: 02.10.2024 19:00 | Campeones: Progrès Niedercorn | ||||
| I | UC Dublin | - | UMF Stjarnan | 3:0 (1:0) | ||
| V | UMF Stjarnan | - | UC Dublin | 3:2 (1:1) | ||
| I: 18.09.2024 20:30 | V: 02.10.2024 21:00 | Campeones: UC Dublin | ||||
