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| Clasificación | » En casa | Fuera de casa | 1.ª vuelta | 2.ª vuelta |
| # | Equipo | P | V | E | D | Goles | DG | Pun. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
V-Varen Nagasaki | 20 | 14 | 4 | 2 | 29:11 | 18 | 46 |
| 2 |
|
JEF United Chiba | 20 | 12 | 6 | 2 | 45:22 | 23 | 42 |
| 3 |
|
Nagoya Grampus | 20 | 13 | 2 | 5 | 48:29 | 19 | 41 |
| 4 |
|
Shonan Bellmare | 20 | 12 | 5 | 3 | 31:17 | 14 | 41 |
| 5 |
|
Tokyo Verdy | 20 | 11 | 5 | 4 | 38:23 | 15 | 38 |
| 6 |
|
Yokohama FC | 20 | 12 | 2 | 6 | 29:16 | 13 | 38 |
| 7 |
|
Matsumoto Yamaga | 20 | 11 | 3 | 6 | 38:21 | 17 | 36 |
| 8 |
|
Mito HollyHock | 20 | 10 | 6 | 4 | 32:18 | 14 | 36 |
| 9 |
|
Montedio Yamagata | 20 | 8 | 9 | 3 | 25:22 | 3 | 33 |
| 10 |
|
Avispa Fukuoka | 20 | 10 | 2 | 8 | 22:20 | 2 | 32 |
| 11 |
|
Fagiano Okayama | 20 | 9 | 4 | 7 | 23:21 | 2 | 31 |
| 12 |
|
Ehime FC | 20 | 9 | 4 | 7 | 21:20 | 1 | 31 |
| 13 |
|
Tokushima Vortis | 20 | 7 | 9 | 4 | 38:25 | 13 | 30 |
| 14 |
|
Kyoto Sanga FC | 20 | 7 | 8 | 5 | 26:23 | 3 | 29 |
| 15 |
|
Zweigen Kanazawa | 20 | 6 | 7 | 7 | 25:33 | -8 | 25 |
| 16 |
|
Oita Trinita | 20 | 5 | 9 | 6 | 23:24 | -1 | 24 |
| 17 |
|
Kamatamare Sanuki | 20 | 4 | 10 | 6 | 19:23 | -4 | 22 |
| 18 |
|
FC Machida Zelvia | 20 | 4 | 7 | 9 | 20:25 | -5 | 19 |
| 19 |
|
Roasso Kumamoto | 20 | 5 | 4 | 11 | 18:26 | -8 | 19 |
| 20 |
|
FC Gifu | 20 | 5 | 4 | 11 | 29:40 | -11 | 19 |
| 21 |
|
Renofa Yamaguchi | 20 | 4 | 2 | 14 | 19:33 | -14 | 14 |
| 22 |
|
Thespakusatsu Gunma | 20 | 2 | 4 | 14 | 13:36 | -23 | 10 |
| Ascenso | |
| Playoff | |
| Descenso |
