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| Clasificación | En casa | » Fuera de casa | 1.ª vuelta | 2.ª vuelta |
| # | Equipo | P | V | E | D | Goles | DG | Pun. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
V-Varen Nagasaki | 19 | 9 | 8 | 2 | 31:22 | 9 | 35 |
| 2 |
|
Yokohama FC | 18 | 10 | 4 | 4 | 30:15 | 15 | 34 |
| 3 |
|
Shimizu S-Pulse | 19 | 11 | 1 | 7 | 27:27 | 0 | 34 |
| 4 |
|
Montedio Yamagata | 19 | 10 | 3 | 6 | 27:20 | 7 | 33 |
| 5 |
|
Iwaki FC | 19 | 9 | 4 | 6 | 28:16 | 12 | 31 |
| 6 |
|
Vegalta Sendai | 19 | 8 | 6 | 5 | 22:22 | 0 | 30 |
| 7 |
|
Tokushima Vortis | 18 | 9 | 3 | 6 | 21:22 | -1 | 30 |
| 8 |
|
Roasso Kumamoto | 18 | 9 | 2 | 7 | 28:29 | -1 | 29 |
| 9 |
|
Fagiano Okayama | 18 | 6 | 9 | 3 | 24:19 | 5 | 27 |
| 10 |
|
Ventforet Kofu | 19 | 7 | 5 | 7 | 25:26 | -1 | 26 |
| 11 |
|
JEF United Chiba | 18 | 7 | 3 | 8 | 21:21 | 0 | 24 |
| 12 |
|
Blaublitz Akita | 19 | 7 | 3 | 9 | 16:19 | -3 | 24 |
| 13 |
|
Renofa Yamaguchi | 19 | 6 | 6 | 7 | 17:24 | -7 | 24 |
| 14 |
|
Oita Trinita | 18 | 6 | 5 | 7 | 18:24 | -6 | 23 |
| 15 |
|
Mito HollyHock | 18 | 6 | 3 | 9 | 14:24 | -10 | 21 |
| 16 |
|
Fujieda MyFC | 18 | 7 | 0 | 11 | 16:35 | -19 | 21 |
| 17 |
|
Ehime FC | 18 | 4 | 5 | 9 | 15:35 | -20 | 17 |
| 18 |
|
Tochigi SC | 19 | 3 | 6 | 10 | 16:34 | -18 | 15 |
| 19 |
|
Thespa Gunma | 18 | 2 | 4 | 12 | 15:33 | -18 | 10 |
| 20 |
|
Kagoshima United | 19 | 0 | 6 | 13 | 11:34 | -23 | 6 |
| Ascenso | |
| Playoff | |
| Descenso |
