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| 07.04.2017 | 19:00 | TSV Buchbach | - | Wacker Burghausen | 3:1 (3:1) | |
| 19:30 | FC Memmingen | - | Bayern Múnich II | 1:1 (0:0) | ||
| 08.04.2017 | 13:00 | VfR Garching | - | Augsburgo II | 0:0 (0:0) | |
| 14:00 | Ingolstadt II | - | FV Illertissen | 1:0 (0:0) | ||
| 14:00 | TSV 1860 München II | - | 1. FC Schweinfurt 05 | 1:1 (1:0) | ||
| 14:00 | TSV 1860 Rosenheim | - | SV Schalding-Heining | 3:0 (1:0) | ||
| 14:00 | SpVgg Unterhaching | - | SV Seligenporten | 1:1 (0:1) | ||
| 09.04.2017 | 14:00 | SpVgg Greuther Fürth II | - | SpVgg Bayern Hof | 4:3 (3:3) | |
| 25.04.2017 | 18:30 | SpVgg Bayreuth | - | 1. FC Nürnberg II | 1:4 (0:2) |
| » Clasificación | En casa | Fuera de casa | 1.ª vuelta | 2.ª vuelta | 1.ª parte | 2.ª parte |
| # | Equipo | P | V | E | D | Goles | DG | Pun. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
SpVgg Unterhaching | 27 | 19 | 7 | 1 | 73:17 | 56 | 64 |
| 2 |
|
FC Memmingen | 27 | 13 | 7 | 7 | 51:30 | 21 | 46 |
| 3 |
|
1. FC Schweinfurt 05 | 27 | 13 | 5 | 9 | 50:41 | 9 | 44 |
| 4 |
|
Bayern Múnich II | 27 | 11 | 10 | 6 | 39:29 | 10 | 43 |
| 5 |
|
Augsburgo II | 27 | 11 | 9 | 7 | 50:27 | 23 | 42 |
| 6 |
|
Wacker Burghausen | 27 | 12 | 6 | 9 | 41:38 | 3 | 42 |
| 7 |
|
1. FC Nürnberg II | 27 | 11 | 7 | 9 | 57:58 | -1 | 40 |
| 8 |
|
FV Illertissen | 27 | 12 | 4 | 11 | 33:36 | -3 | 40 |
| 9 |
|
VfR Garching | 27 | 11 | 4 | 12 | 44:51 | -7 | 37 |
| 10 |
|
SpVgg Bayreuth | 27 | 10 | 6 | 11 | 42:44 | -2 | 36 |
| 11 |
|
TSV 1860 Rosenheim | 27 | 10 | 5 | 12 | 34:41 | -7 | 35 |
| 12 |
|
Ingolstadt II | 27 | 8 | 9 | 10 | 38:44 | -6 | 33 |
| 13 |
|
TSV Buchbach | 27 | 8 | 7 | 12 | 35:51 | -16 | 31 |
| 14 |
|
SpVgg Greuther Fürth II | 27 | 7 | 7 | 13 | 33:43 | -10 | 28 |
| 15 |
|
SV Schalding-Heining | 27 | 5 | 9 | 13 | 32:49 | -17 | 24 |
| 16 |
|
SV Seligenporten | 27 | 6 | 6 | 15 | 34:61 | -27 | 24 |
| 17 |
|
SpVgg Bayern Hof | 27 | 2 | 3 | 22 | 29:67 | -38 | 9 |
| 18 |
|
TSV 1860 München II | 27 | 15 | 7 | 5 | 0:0 | 2 | -11 |
| Playoff | |
| Permanencia | |
| Descenso |
