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| 13.12.2008 | 14:00 | Hessen Kassel | - | SC Freiburg II | 2:1 (2:1) | |
| 14:00 | 1. FC Nürnberg II | - | 1. FC Heidenheim 1846 | 6:1 (3:1) | ||
| 14:00 | Karlsruher SC II | - | TSV Großbardorf | 2:1 (0:1) | ||
| 14:00 | SV Wehen Wiesbaden II | - | Viktoria Aschaffenburg | 2:1 (0:0) | ||
| 17.12.2008 | 18:30 | SSV Ulm 1846 | - | Eintracht Frankfurt II | 0:0 (0:0) | |
| 19:00 | TSV 1860 München II | - | SpVgg Greuther Fürth II | 1:0 (1:0) | ||
| 19:00 | 1. FC Eintracht Bamberg | - | Waldhof Mannheim | 2:0 (1:0) | ||
| 19:00 | SpVgg Unterhaching II | - | Darmstadt | 1:3 (0:1) | ||
| 29.04.2009 | 19:00 | SC Pfullendorf | - | SSV Reutlingen | 1:1 (1:0) |
| » Clasificación | En casa | Fuera de casa | 1.ª vuelta | 2.ª vuelta |
| # | Equipo | P | V | E | D | Goles | DG | Pun. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Eintracht Frankfurt II | 17 | 11 | 5 | 1 | 31:10 | 21 | 38 |
| 2 |
|
Hessen Kassel | 17 | 10 | 3 | 4 | 34:17 | 17 | 33 |
| 3 |
|
Waldhof Mannheim | 17 | 10 | 1 | 6 | 29:20 | 9 | 31 |
| 4 |
|
1. FC Heidenheim 1846 | 17 | 9 | 4 | 4 | 29:22 | 7 | 31 |
| 5 |
|
SV Wehen Wiesbaden II | 17 | 9 | 2 | 6 | 22:14 | 8 | 29 |
| 6 |
|
1. FC Nürnberg II | 17 | 8 | 4 | 5 | 33:19 | 14 | 28 |
| 7 |
|
SSV Ulm 1846 | 17 | 6 | 9 | 2 | 24:16 | 8 | 27 |
| 8 |
|
TSV 1860 München II | 17 | 7 | 5 | 5 | 24:20 | 4 | 26 |
| 9 |
|
SC Pfullendorf | 17 | 7 | 4 | 6 | 23:24 | -1 | 25 |
| 10 |
|
SpVgg Greuther Fürth II | 17 | 6 | 5 | 6 | 20:16 | 4 | 23 |
| 11 |
|
Karlsruher SC II | 17 | 6 | 4 | 7 | 21:26 | -5 | 22 |
| 12 |
|
Darmstadt | 17 | 5 | 6 | 6 | 24:23 | 1 | 21 |
| 13 |
|
1. FC Eintracht Bamberg | 17 | 5 | 5 | 7 | 31:37 | -6 | 20 |
| 14 |
|
Viktoria Aschaffenburg | 17 | 3 | 8 | 6 | 15:20 | -5 | 17 |
| 15 |
|
SSV Reutlingen | 17 | 4 | 5 | 8 | 17:29 | -12 | 17 |
| 16 |
|
TSV Großbardorf | 17 | 3 | 5 | 9 | 22:38 | -16 | 14 |
| 17 |
|
SC Freiburg II | 17 | 2 | 4 | 11 | 14:35 | -21 | 10 |
| 18 |
|
SpVgg Unterhaching II | 17 | 1 | 3 | 13 | 16:43 | -27 | 6 |
| Ascenso | |
| Descenso |
