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| 06.03.2009 | 19:00 | Waldhof Mannheim | - | SpVgg Greuther Fürth II | 0:0 (0:0) | |
| 07.03.2009 | 14:00 | TSV Großbardorf | - | 1. FC Eintracht Bamberg | 0:2 (0:1) | |
| 14:00 | Darmstadt | - | SSV Ulm 1846 | 0:4 (0:2) | ||
| 14:00 | SV Wehen Wiesbaden II | - | SC Pfullendorf | 1:1 (0:0) | ||
| 14:00 | Viktoria Aschaffenburg | - | Karlsruher SC II | 2:1 (2:1) | ||
| 08.03.2009 | 14:00 | SpVgg Unterhaching II | - | 1. FC Nürnberg II | 1:1 (1:1) | |
| 14:00 | Eintracht Frankfurt II | - | SC Freiburg II | 1:2 (1:1) | ||
| 01.04.2009 | 18:00 | 1. FC Heidenheim 1846 | - | TSV 1860 München II | 2:0 (0:0) | |
| 22.04.2009 | 19:00 | SSV Reutlingen | - | Hessen Kassel | 2:2 (0:0) |
| » Clasificación | En casa | Fuera de casa | 1.ª vuelta | 2.ª vuelta |
| # | Equipo | P | V | E | D | Goles | DG | Pun. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Eintracht Frankfurt II | 21 | 12 | 6 | 3 | 37:17 | 20 | 42 |
| 2 |
|
Hessen Kassel | 21 | 12 | 5 | 4 | 43:22 | 21 | 41 |
| 3 |
|
1. FC Heidenheim 1846 | 21 | 11 | 5 | 5 | 34:25 | 9 | 38 |
| 4 |
|
SSV Ulm 1846 | 21 | 9 | 10 | 2 | 34:18 | 16 | 37 |
| 5 |
|
1. FC Nürnberg II | 21 | 10 | 6 | 5 | 43:23 | 20 | 36 |
| 6 |
|
SV Wehen Wiesbaden II | 21 | 11 | 3 | 7 | 28:19 | 9 | 36 |
| 7 |
|
Waldhof Mannheim | 21 | 11 | 2 | 8 | 34:24 | 10 | 35 |
| 8 |
|
SC Pfullendorf | 21 | 10 | 5 | 6 | 31:26 | 5 | 35 |
| 9 |
|
TSV 1860 München II | 21 | 8 | 5 | 8 | 31:30 | 1 | 29 |
| 10 |
|
1. FC Eintracht Bamberg | 21 | 8 | 5 | 8 | 36:39 | -3 | 29 |
| 11 |
|
SpVgg Greuther Fürth II | 21 | 6 | 7 | 8 | 22:22 | 0 | 25 |
| 12 |
|
Darmstadt | 21 | 6 | 7 | 8 | 27:30 | -3 | 25 |
| 13 |
|
Viktoria Aschaffenburg | 21 | 5 | 9 | 7 | 22:26 | -4 | 24 |
| 14 |
|
Karlsruher SC II | 21 | 6 | 4 | 11 | 22:35 | -13 | 22 |
| 15 |
|
SC Freiburg II | 21 | 5 | 4 | 12 | 20:40 | -20 | 19 |
| 16 |
|
SSV Reutlingen | 21 | 4 | 6 | 11 | 21:40 | -19 | 18 |
| 17 |
|
TSV Großbardorf | 21 | 3 | 5 | 13 | 23:49 | -26 | 14 |
| 18 |
|
SpVgg Unterhaching II | 21 | 3 | 4 | 14 | 24:47 | -23 | 13 |
| Ascenso | |
| Descenso |
