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| 26.03.2009 | 19:00 | Hessen Kassel | - | Darmstadt | 3:0 (3:0) | |
| 28.03.2009 | 14:00 | Eintracht Frankfurt II | - | Viktoria Aschaffenburg | 1:0 (0:0) | |
| 14:00 | SC Freiburg II | - | TSV Großbardorf | 3:0 (2:0) | ||
| 14:00 | SpVgg Greuther Fürth II | - | 1. FC Heidenheim 1846 | 1:2 (0:0) | ||
| 14:00 | Waldhof Mannheim | - | SSV Reutlingen | 3:0 (3:0) | ||
| 14:00 | SC Pfullendorf | - | 1. FC Nürnberg II | 1:2 (1:0) | ||
| 14:00 | SSV Ulm 1846 | - | Karlsruher SC II | 6:1 (4:0) | ||
| 14:00 | TSV 1860 München II | - | SV Wehen Wiesbaden II | 0:1 (0:1) | ||
| 04.04.2009 | 14:00 | 1. FC Eintracht Bamberg | - | SpVgg Unterhaching II | 2:0 (1:0) |
| » Clasificación | En casa | Fuera de casa | 1.ª vuelta | 2.ª vuelta |
| # | Equipo | P | V | E | D | Goles | DG | Pun. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Hessen Kassel | 24 | 14 | 5 | 5 | 49:24 | 25 | 47 |
| 2 |
|
1. FC Heidenheim 1846 | 24 | 14 | 5 | 5 | 42:27 | 15 | 47 |
| 3 |
|
1. FC Nürnberg II | 24 | 13 | 6 | 5 | 50:26 | 24 | 45 |
| 4 |
|
Eintracht Frankfurt II | 24 | 13 | 6 | 5 | 39:21 | 18 | 45 |
| 5 |
|
SSV Ulm 1846 | 24 | 11 | 11 | 2 | 42:19 | 23 | 44 |
| 6 |
|
Waldhof Mannheim | 24 | 13 | 3 | 8 | 40:25 | 15 | 42 |
| 7 |
|
SV Wehen Wiesbaden II | 24 | 13 | 3 | 8 | 32:21 | 11 | 42 |
| 8 |
|
SC Pfullendorf | 24 | 11 | 5 | 8 | 35:31 | 4 | 38 |
| 9 |
|
1. FC Eintracht Bamberg | 24 | 10 | 5 | 9 | 40:43 | -3 | 35 |
| 10 |
|
TSV 1860 München II | 24 | 9 | 5 | 10 | 37:34 | 3 | 32 |
| 11 |
|
SpVgg Greuther Fürth II | 24 | 7 | 7 | 10 | 25:26 | -1 | 28 |
| 12 |
|
Darmstadt | 24 | 7 | 7 | 10 | 31:37 | -6 | 28 |
| 13 |
|
Viktoria Aschaffenburg | 24 | 5 | 10 | 9 | 24:31 | -7 | 25 |
| 14 |
|
Karlsruher SC II | 24 | 7 | 4 | 13 | 26:43 | -17 | 25 |
| 15 |
|
SSV Reutlingen | 24 | 6 | 6 | 12 | 25:45 | -20 | 24 |
| 16 |
|
SC Freiburg II | 24 | 6 | 4 | 14 | 26:48 | -22 | 22 |
| 17 |
|
SpVgg Unterhaching II | 24 | 3 | 5 | 16 | 25:52 | -27 | 14 |
| 18 |
|
TSV Großbardorf | 24 | 3 | 5 | 16 | 24:59 | -35 | 14 |
| Ascenso | |
| Descenso |
