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| 24.04.2009 | 19:00 | SC Pfullendorf | - | 1. FC Eintracht Bamberg | 4:2 (2:1) | |
| 25.04.2009 | 14:00 | 1. FC Nürnberg II | - | TSV 1860 München II | 0:4 (0:2) | |
| 14:00 | Viktoria Aschaffenburg | - | SSV Ulm 1846 | 0:0 (0:0) | ||
| 14:00 | 1. FC Heidenheim 1846 | - | SSV Reutlingen | 1:0 (1:0) | ||
| 14:00 | Darmstadt | - | Waldhof Mannheim | 1:1 (1:0) | ||
| 14:00 | SV Wehen Wiesbaden II | - | SpVgg Greuther Fürth II | 2:2 (1:0) | ||
| 26.04.2009 | 14:00 | Karlsruher SC II | - | Hessen Kassel | 2:5 (0:2) | |
| 14:00 | SpVgg Unterhaching II | - | SC Freiburg II | 1:4 (0:1) | ||
| 05.05.2009 | 18:00 | TSV Großbardorf | - | Eintracht Frankfurt II | 1:5 (0:4) |
| » Clasificación | En casa | Fuera de casa | 1.ª vuelta | 2.ª vuelta |
| # | Equipo | P | V | E | D | Goles | DG | Pun. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Hessen Kassel | 27 | 17 | 5 | 5 | 59:26 | 33 | 56 |
| 2 |
|
1. FC Heidenheim 1846 | 27 | 16 | 6 | 5 | 46:29 | 17 | 54 |
| 3 |
|
1. FC Nürnberg II | 27 | 14 | 7 | 6 | 54:32 | 22 | 49 |
| 4 |
|
Eintracht Frankfurt II | 27 | 14 | 7 | 6 | 46:28 | 18 | 49 |
| 5 |
|
SSV Ulm 1846 | 27 | 11 | 13 | 3 | 47:25 | 22 | 46 |
| 6 |
|
Waldhof Mannheim | 27 | 14 | 4 | 9 | 44:28 | 16 | 46 |
| 7 |
|
SC Pfullendorf | 27 | 13 | 5 | 9 | 44:38 | 6 | 44 |
| 8 |
|
SV Wehen Wiesbaden II | 27 | 13 | 4 | 10 | 35:27 | 8 | 43 |
| 9 |
|
TSV 1860 München II | 27 | 12 | 5 | 10 | 46:34 | 12 | 41 |
| 10 |
|
1. FC Eintracht Bamberg | 27 | 11 | 5 | 11 | 46:50 | -4 | 38 |
| 11 |
|
SpVgg Greuther Fürth II | 27 | 9 | 8 | 10 | 32:29 | 3 | 35 |
| 12 |
|
Viktoria Aschaffenburg | 27 | 6 | 12 | 9 | 28:34 | -6 | 30 |
| 13 |
|
Darmstadt | 27 | 7 | 9 | 11 | 33:41 | -8 | 30 |
| 14 |
|
SC Freiburg II | 27 | 8 | 5 | 14 | 33:50 | -17 | 29 |
| 15 |
|
SSV Reutlingen | 27 | 7 | 7 | 13 | 32:49 | -17 | 28 |
| 16 |
|
Karlsruher SC II | 27 | 7 | 4 | 16 | 29:55 | -26 | 25 |
| 17 |
|
SpVgg Unterhaching II | 27 | 3 | 5 | 19 | 26:62 | -36 | 14 |
| 18 |
|
TSV Großbardorf | 27 | 3 | 5 | 19 | 25:68 | -43 | 14 |
| Ascenso | |
| Descenso |
