| 1. Jornada | 18.03.2006 | Dinamo Moskva | - | Shinnik Yaroslavl | 1:1 | ||||
| 3. Jornada | 01.04.2006 | Shinnik Yaroslavl | - | FK Tom Tomsk | 0:1 | ||||
| 4. Jornada | 08.04.2006 | FK Saturn | - | Shinnik Yaroslavl | 3:0 | ||||
| 6. Jornada | 23.04.2006 | FK Rostov | - | Shinnik Yaroslavl | 0:0 |  |
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| 7. Jornada | 30.04.2006 | Shinnik Yaroslavl | - | Krylia Sovetov | 1:0 | ||||
| 8. Jornada | 07.05.2006 | Luch-Energiya Vladivostok | - | Shinnik Yaroslavl | 1:0 | ||||
| 9. Jornada | 13.05.2006 | Shinnik Yaroslavl | - | Spartak Nalchik | 0:1 | |
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| 10. Jornada | 12.07.2006 | Spartak Moskva | - | Shinnik Yaroslavl | 3:1 | ||||
| 11. Jornada | 16.07.2006 | Shinnik Yaroslavl | - | Lokomotiv Moskva | 1:3 | ||||
| 29. Jornada | 18.11.2006 | Shinnik Yaroslavl | - | Zenit | 1:2 | ||||
| 30. Jornada | 25.11.2006 | Torpedo Moskva | - | Shinnik Yaroslavl | 1:1 |
Rumania