| 1. Jornada | 28.07.2008 | FC Thun | - | FC Wil 1900 | 2:1 | ||||
| 2. Jornada | 02.08.2008 | FC Lausanne-Sport | - | FC Thun | 3:1 |  |
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| 3. Jornada | 10.08.2008 | FC Thun | - | FC Lugano | 4:4 | |
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| 6. Jornada | 29.08.2008 | FC Concordia Basel | - | FC Thun | 1:3 | ||||
| 7. Jornada | 14.09.2008 | FC Thun | - | FC St. Gallen | 4:2 | ||||
| 8. Jornada | 27.09.2008 | FC Wohlen | - | FC Thun | 2:2 | ||||
| 9. Jornada | 06.10.2008 | FC Thun | - | FC Gossau | 4:1 | ||||
| 10. Jornada | 25.10.2008 | FC Stade Nyonnais | - | FC Thun | 0:2 | ||||
| 11. Jornada | 03.11.2008 | FC Thun | - | Yverdon Sport FC | 2:4 | |
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| 12. Jornada | 09.11.2008 | FC Biel/Bienne | - | FC Thun | 3:2 | ||||
| 13. Jornada | 15.11.2008 | FC Thun | - | FC Locarno | 2:1 | ||||
| 14. Jornada | 29.11.2008 | Servette FC | - | FC Thun | 4:1 | ||||
| 17. Jornada | 28.02.2009 | FC Lugano | - | FC Thun | 3:1 | |
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| 19. Jornada | 15.03.2009 | FC Schaffhausen | - | FC Thun | 2:2 | ||||
| 20. Jornada | 23.03.2009 | FC Thun | - | FC Concordia Basel | 1:0 |
Finlandia