| 5. Jornada | 20.08.2012 | Krylia Sovetov | - | FK Amkar Perm | 0:2 | ||||
| 6. Jornada | 26.08.2012 | FK Amkar Perm | - | FK Krasnodar | 2:2 |  |
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| 7. Jornada | 01.09.2012 | Spartak Vladikavkaz | - | FK Amkar Perm | 1:1 | ||||
| 11. Jornada | 07.10.2012 | Rubin Kazan | - | FK Amkar Perm | 0:1 | ||||
| 12. Jornada | 21.10.2012 | FK Amkar Perm | - | Terek Grozny | 0:1 | ||||
| 13. Jornada | 26.10.2012 | Lokomotiv Moskva | - | FK Amkar Perm | 1:2 | ||||
| 14. Jornada | 03.11.2012 | FK Amkar Perm | - | Kuban Krasnodar (1928-2018) | 0:3 | ||||
| 15. Jornada | 09.11.2012 | FK Rostov | - | FK Amkar Perm | 3:0 | ||||
| 16. Jornada | 18.11.2012 | CSKA Moscú | - | FK Amkar Perm | 3:0 | ||||
| 26. Jornada | 27.04.2013 | Terek Grozny | - | FK Amkar Perm | 2:1 |
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