| 1. Jornada | 31.08.2016 | Boston River | - | Defensor Sporting | 1:1 | ||||
| 2. Jornada | 04.09.2016 | River Plate | - | Boston River | 1:5 |  |
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| 3. Jornada | 10.09.2016 | Boston River | - | CA Cerro | 1:1 | |
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| 5. Jornada | 24.09.2016 | Boston River | - | Racing | 1:1 | ||||
| 6. Jornada | 02.10.2016 | Juventud de Las Piedras | - | Boston River | 0:1 | |
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| 7. Jornada | 08.10.2016 | Sud América | - | Boston River | 0:1 | |
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| 8. Jornada | 15.10.2016 | Montevideo Wanderers | - | Boston River | 1:0 | ||||
| 9. Jornada | 22.10.2016 | Fénix | - | Boston River | 1:1 |  |
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| 10. Jornada | 29.10.2016 | Boston River | - | Danubio | 1:2 |  |
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| 12. Jornada | 19.11.2016 | Villa Española | - | Boston River | 0:3 | |
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| 13. Jornada | 28.11.2016 | Boston River | - | Liverpool | 0:0 | ||||
| 14. Jornada | 03.12.2016 | Boston River | - | Rampla Juniors | 2:0 | ||||
| 15. Jornada | 11.12.2016 | Nacional | - | Boston River | 1:0 |
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