| 2. Jornada | 26.08.2016 | Tarxien Rainbows | - | Birkirkara FC | 0:4 |  |
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| 3. Jornada | 11.09.2016 | Birkirkara FC | - | Hamrun Spartans | 2:1 | ||||
| 4. Jornada | 18.09.2016 | Sliema Wanderers | - | Birkirkara FC | 2:1 | |
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| 5. Jornada | 22.09.2016 | Birkirkara FC | - | Mosta FC | 2:0 | |
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| 6. Jornada | 26.09.2016 | Pembroke Athleta FC | - | Birkirkara FC | 2:1 | |
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| 7. Jornada | 30.09.2016 | Valletta FC | - | Birkirkara FC | 1:1 | ||||
| 8. Jornada | 16.10.2016 | Birkirkara FC | - | Balzan FC | 3:0 | ||||
| 9. Jornada | 22.10.2016 | Gżira United | - | Birkirkara FC | 1:7 | |
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| 10. Jornada | 30.10.2016 | Birkirkara FC | - | Hibernians FC | 0:1 |  |
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| 11. Jornada | 04.11.2016 | Floriana FC | - | Birkirkara FC | 1:1 | ||||
| 12. Jornada | 19.11.2016 | St. Andrews FC | - | Birkirkara FC | 1:1 | ||||
| 13. Jornada | 26.11.2016 | Birkirkara FC | - | Tarxien Rainbows | 3:1 | ||||
| 14. Jornada | 04.12.2016 | Hamrun Spartans | - | Birkirkara FC | 2:0 | ||||
| 15. Jornada | 11.12.2016 | Birkirkara FC | - | Sliema Wanderers | 1:2 | ||||
| 16. Jornada | 04.01.2017 | Mosta FC | - | Birkirkara FC | 0:2 |
Nigeria