| 1. Jornada | 15.07.2016 | Slaven Belupo | - | NK Inter Zaprešić | 2:0 |  |
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| 2. Jornada | 23.07.2016 | NK Inter Zaprešić | - | NK Osijek | 0:2 | ||||
| 3. Jornada | 30.07.2016 | HNK Cibalia | - | NK Inter Zaprešić | 3:3 | ||||
| 4. Jornada | 07.08.2016 | NK Inter Zaprešić | - | HNK Rijeka | 1:1 | |
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| 5. Jornada | 13.08.2016 | Dinamo Zagreb | - | NK Inter Zaprešić | 2:1 | ||||
| 6. Jornada | 21.08.2016 | NK Inter Zaprešić | - | Lokomotiva Zagreb | 2:1 | |
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| 9. Jornada | 17.09.2016 | NK Istra 1961 | - | NK Inter Zaprešić | 4:1 | ||||
| 10. Jornada | 24.09.2016 | NK Inter Zaprešić | - | Slaven Belupo | 1:1 | ||||
| 11. Jornada | 01.10.2016 | NK Osijek | - | NK Inter Zaprešić | 1:1 | ||||
| 13. Jornada | 23.10.2016 | HNK Rijeka | - | NK Inter Zaprešić | 1:0 | ||||
| 14. Jornada | 29.10.2016 | NK Inter Zaprešić | - | Dinamo Zagreb | 0:1 | ||||
| 17. Jornada | 27.11.2016 | Hajduk Split | - | NK Inter Zaprešić | 2:0 | |
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| 18. Jornada | 05.12.2016 | NK Inter Zaprešić | - | NK Istra 1961 | 2:2 | ||||
| 19. Jornada | 09.12.2016 | Slaven Belupo | - | NK Inter Zaprešić | 2:0 |
Croacia