| 2. Jornada | 20.05.2020 | FC Flora | - | JK Tammeka | 0:0 | ||||
| 4. Jornada | 30.05.2020 | FC Flora | - | JK Tallinna Kalev | 3:0 | ||||
| 5. Jornada | 03.06.2020 | Paide Linnameeskond | - | FC Flora | 1:3 |  |
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| 6. Jornada | 07.06.2020 | JK Nõmme Kalju | - | FC Flora | 1:2 | ||||
| 7. Jornada | 12.06.2020 | FC Flora | - | Tulevik Viljandi | 3:0 |  |
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| 8. Jornada | 17.06.2020 | FC Flora | - | FCI Levadia | 4:0 | ||||
| 9. Jornada | 27.06.2020 | FC Kuressaare | - | FC Flora | 0:4 | ||||
| 10. Jornada | 30.06.2020 | FC Flora | - | JK Narva Trans | 3:1 | ||||
| 11. Jornada | 08.07.2020 | Tulevik Viljandi | - | FC Flora | 2:1 | ||||
| 13. Jornada | 18.07.2020 | FCI Levadia | - | FC Flora | 1:3 | |
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| 14. Jornada | 24.07.2020 | FC Flora | - | JK Nõmme Kalju | 2:1 | ||||
| 19. Jornada | 04.10.2020 | FC Flora | - | Tulevik Viljandi | 2:1 | ||||
| 24. Jornada | 21.10.2020 | JK Narva Trans | - | FC Flora | 1:2 | ||||
| 25. Jornada | 25.10.2020 | FC Kuressaare | - | FC Flora | 0:4 | ||||
| 26. Jornada | 01.11.2020 | FC Flora | - | JK Nõmme Kalju | 0:0 | ||||
| 27. Jornada | 08.11.2020 | JK Tammeka | - | FC Flora | 0:1 |
Estonia