| 3. Jornada | 24.05.2020 | JK Narva Trans | - | FC Flora | 2:3 | ||||
| 4. Jornada | 30.05.2020 | FC Flora | - | JK Tallinna Kalev | 3:0 | ||||
| 5. Jornada | 03.06.2020 | Paide Linnameeskond | - | FC Flora | 1:3 | ||||
| 7. Jornada | 12.06.2020 | FC Flora | - | Tulevik Viljandi | 3:0 | ||||
| 9. Jornada | 27.06.2020 | FC Kuressaare | - | FC Flora | 0:4 | ||||
| 10. Jornada | 30.06.2020 | FC Flora | - | JK Narva Trans | 3:1 | ||||
| 15. Jornada | 31.07.2020 | JK Tallinna Kalev | - | FC Flora | 0:3 | ||||
| 16. Jornada | 07.08.2020 | FC Flora | - | FC Kuressaare | 3:0 | ||||
| 17. Jornada | 14.08.2020 | JK Tammeka | - | FC Flora | 1:3 | ||||
| 18. Jornada | 23.08.2020 | Tallinna JK Legion | - | FC Flora | 1:3 | ||||
| 23. Jornada | 29.08.2020 | FC Flora | - | Tallinna JK Legion | 1:0 | ||||
| 20. Jornada | 12.09.2020 | JK Tallinna Kalev | - | FC Flora | 1:4 | ||||
| 19. Jornada | 04.10.2020 | FC Flora | - | Tulevik Viljandi | 2:1 |  |
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| 24. Jornada | 21.10.2020 | JK Narva Trans | - | FC Flora | 1:2 | ||||
| 25. Jornada | 25.10.2020 | FC Kuressaare | - | FC Flora | 0:4 | |
 |
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| 26. Jornada | 01.11.2020 | FC Flora | - | JK Nõmme Kalju | 0:0 | ||||
| 27. Jornada | 08.11.2020 | JK Tammeka | - | FC Flora | 0:1 | ||||
| 22. Jornada | 02.12.2020 | FCI Levadia | - | FC Flora | 0:2 |
Inglaterra