| 12. Jornada | 21.10.2023 | 1. FC Slovácko [Juvenil] | - | FC Zlín [Juvenil] | 1:3 | ||||
| 13. Jornada | 26.10.2023 | FC Zlín [Juvenil] | - | Sigma Olomouc [Juvenil] | 1:0 | ||||
| 14. Jornada | 04.11.2023 | FK Pardubice [Juvenil] | - | FC Zlín [Juvenil] | 0:1 | ||||
| 15. Jornada | 21.02.2024 | FC Zlín [Juvenil] | - | AC Sparta Praha [Juvenil] | 2:2 | ||||
| 16. Jornada | 02.03.2024 | Dynamo České Budějovice [Juvenil] | - | FC Zlín [Juvenil] | 1:2 | ||||
| 17. Jornada | 08.03.2024 | FC Zlín [Juvenil] | - | Vysočina Jihlava [Juvenil] | 0:3 | ||||
| 18. Jornada | 15.03.2024 | FK Dukla Praha [Juvenil] | - | FC Zlín [Juvenil] | 3:3 |  |
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| 19. Jornada | 23.03.2024 | FC Zlín [Juvenil] | - | FK Mladá Boleslav [Juvenil] | 4:1 | ||||
| 20. Jornada | 29.03.2024 | Slovan Liberec [Juvenil] | - | FC Zlín [Juvenil] | 1:2 | |
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| 21. Jornada | 05.04.2024 | FC Zlín [Juvenil] | - | FC Zbrojovka Brno [Juvenil] | 2:3 | ||||
| 22. Jornada | 13.04.2024 | Slavia Praha [Juvenil] | - | FC Zlín [Juvenil] | 4:0 |
República Checa