| 1. Jornada | 17.07.2016 | FK Senica | - | Slovan Bratislava | 0:1 | ||||
| 4. Jornada | 06.08.2016 | 1. FC Tatran Prešov | - | FK Senica | 0:4 |  |
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| 6. Jornada | 20.08.2016 | FK Senica | - | FO ŽP Šport Podbrezová | 0:1 | ||||
| 8. Jornada | 10.09.2016 | FK Senica | - | MFK Ružomberok | 1:1 | ||||
| 9. Jornada | 17.09.2016 | MŠK Žilina | - | FK Senica | 4:2 | ||||
| 10. Jornada | 24.09.2016 | FK Senica | - | Spartak Trnava | 0:1 | ||||
| 12. Jornada | 16.10.2016 | Slovan Bratislava | - | FK Senica | 2:0 | ||||
| 18. Jornada | 03.12.2016 | FK Senica | - | FC DAC 1904 | 1:1 |
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