| 3. Jornada | 15.09.2012 | Panthrakikos | - | Panathinaikos | 1:0 |  |
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| 4. Jornada | 24.09.2012 | Panathinaikos | - | Atromitos | 1:1 | ||||
| 5. Jornada | 30.09.2012 | Panathinaikos | - | Asteras Tripolis | 0:0 | ||||
| 7. Jornada | 21.10.2012 | Panathinaikos | - | Aris Saloniki | 1:1 | ||||
| 8. Jornada | 29.10.2012 | OFI Heraklion | - | Panathinaikos | 2:2 | ||||
| 9. Jornada | 04.11.2012 | Panathinaikos | - | AEK Athen | 1:0 | ||||
| 10. Jornada | 12.11.2012 | AO Kerkyra | - | Panathinaikos | 0:0 | ||||
| 11. Jornada | 18.11.2012 | Panathinaikos | - | PAOK Saloniki | 2:0 | ||||
| 16. Jornada | 05.01.2013 | Panathinaikos | - | Levadiakos | 1:2 | |
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| 17. Jornada | 13.01.2013 | PAS Giannina | - | Panathinaikos | 0:0 | |
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| 18. Jornada | 19.01.2013 | Panathinaikos | - | Panthrakikos | 1:1 | ||||
| 27. Jornada | 30.03.2013 | Panathinaikos | - | Platanias Chanion | 0:1 | ||||
| 28. Jornada | 07.04.2013 | Panathinaikos | - | Panionios GSS | 0:0 |
Países Bajos