| 1. Jornada | 28.07.2008 | FC Thun | - | FC Wil 1900 | 2:1 | ||||
| 2. Jornada | 02.08.2008 | FC Lausanne-Sport | - | FC Thun | 3:1 | ||||
| 3. Jornada | 10.08.2008 | FC Thun | - | FC Lugano | 4:4 |  |
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| 4. Jornada | 15.08.2008 | FC Winterthur | - | FC Thun | 1:3 | ||||
| 5. Jornada | 23.08.2008 | FC Thun | - | FC Schaffhausen | 0:3 | |
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| 6. Jornada | 29.08.2008 | FC Concordia Basel | - | FC Thun | 1:3 |  |
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| 7. Jornada | 14.09.2008 | FC Thun | - | FC St. Gallen | 4:2 | |
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| 8. Jornada | 27.09.2008 | FC Wohlen | - | FC Thun | 2:2 | ||||
| 9. Jornada | 06.10.2008 | FC Thun | - | FC Gossau | 4:1 | |
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| 13. Jornada | 15.11.2008 | FC Thun | - | FC Locarno | 2:1 | ||||
| 15. Jornada | 05.12.2008 | FC Thun | - | FC La Chaux-de-Fonds | 0:4 |  |
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| 23. Jornada | 17.04.2009 | FC Gossau | - | FC Thun | 4:3 | ||||
| 24. Jornada | 22.04.2009 | FC Thun | - | FC Stade Nyonnais | 1:1 | |
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| 25. Jornada | 26.04.2009 | Yverdon Sport FC | - | FC Thun | 5:1 | |
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| 26. Jornada | 04.05.2009 | FC Thun | - | FC Biel/Bienne | 2:2 | ||||
| 27. Jornada | 09.05.2009 | FC Locarno | - | FC Thun | 4:1 | |
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| 29. Jornada | 24.05.2009 | FC Thun | - | Servette FC | 3:0 | ||||
| 30. Jornada | 30.05.2009 | FC La Chaux-de-Fonds | - | FC Thun | 0:1 | |
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