| 29. Jornada | 04.02.2017 | Blackpool FC | - | Colchester United | 1:1 |  |
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| 28. Jornada | 21.02.2017 | Colchester United | - | Wycombe Wanderers | 1:0 | ||||
| 33. Jornada | 25.02.2017 | Colchester United | - | Hartlepool United | 2:1 | ||||
| 34. Jornada | 28.02.2017 | Grimsby Town | - | Colchester United | 1:0 |  |
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| 35. Jornada | 04.03.2017 | Cambridge United | - | Colchester United | 1:1 | ||||
| 36. Jornada | 11.03.2017 | Colchester United | - | Portsmouth FC | 0:4 | ||||
| 37. Jornada | 14.03.2017 | Colchester United | - | Mansfield Town | 2:0 | ||||
| 38. Jornada | 18.03.2017 | Crewe Alexandra | - | Colchester United | 2:0 | ||||
| 39. Jornada | 25.03.2017 | Colchester United | - | Luton Town | 2:1 | ||||
| 40. Jornada | 01.04.2017 | Notts County | - | Colchester United | 3:1 | ||||
| 41. Jornada | 08.04.2017 | Colchester United | - | Stevenage FC | 4:0 | ||||
| 42. Jornada | 14.04.2017 | Colchester United | - | Doncaster Rovers | 1:1 | ||||
| 43. Jornada | 17.04.2017 | Morecambe FC | - | Colchester United | 1:1 | ||||
| 44. Jornada | 22.04.2017 | Colchester United | - | Plymouth Argyle | 0:0 | ||||
| 45. Jornada | 29.04.2017 | Leyton Orient | - | Colchester United | 1:3 | ||||
| 46. Jornada | 06.05.2017 | Colchester United | - | Yeovil Town | 2:0 |
Inglaterra