| 1. Jornada | 17.03.2006 | FK Moskva | - | FK Amkar Perm | 1:0 | ||||
| 2. Jornada | 26.03.2006 | FK Amkar Perm | - | Zenit | 1:3 |  |
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| 3. Jornada | 31.03.2006 | Torpedo Moskva | - | FK Amkar Perm | 0:0 | ||||
| 4. Jornada | 09.04.2006 | FK Amkar Perm | - | Dinamo Moskva | 3:2 | ||||
| 5. Jornada | 16.04.2006 | Shinnik Yaroslavl | - | FK Amkar Perm | 0:0 | ||||
| 6. Jornada | 22.04.2006 | FK Amkar Perm | - | FK Tom Tomsk | 0:0 | ||||
| 7. Jornada | 30.04.2006 | FK Saturn | - | FK Amkar Perm | 0:0 | ||||
| 28. Jornada | 07.07.2006 | Spartak Moskva | - | FK Amkar Perm | 4:1 | ||||
| 10. Jornada | 12.07.2006 | Krylia Sovetov | - | FK Amkar Perm | 6:1 | ||||
| 11. Jornada | 16.07.2006 | FK Amkar Perm | - | Luch-Energiya Vladivostok | 0:0 | ||||
| 13. Jornada | 29.07.2006 | FK Amkar Perm | - | Spartak Moskva | 1:3 | ||||
| 20. Jornada | 24.09.2006 | FK Amkar Perm | - | Shinnik Yaroslavl | 1:0 | ||||
| 21. Jornada | 30.09.2006 | FK Tom Tomsk | - | FK Amkar Perm | 1:3 | ||||
| 22. Jornada | 14.10.2006 | FK Amkar Perm | - | FK Saturn | 1:0 | ||||
| 26. Jornada | 04.11.2006 | Luch-Energiya Vladivostok | - | FK Amkar Perm | 3:1 | |
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| 27. Jornada | 08.11.2006 | FK Amkar Perm | - | Spartak Nalchik | 1:0 |
Croacia