| 4. Jornada | 18.03.2016 | JK Narva Trans | - | FC Levadia | 1:1 | ||||
| 8. Jornada | 16.04.2016 | JK Narva Trans | - | Pärnu Linnameeskond | 4:0 | ||||
| 15. Jornada | 10.05.2016 | FC Levadia | - | JK Narva Trans | 1:0 | ||||
| 14. Jornada | 24.05.2016 | JK Narva Trans | - | FC Flora | 1:2 | ||||
| 20. Jornada | 23.07.2016 | JK Narva Trans | - | JK Sillamäe Kalev | 1:3 |  |
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| 21. Jornada | 30.07.2016 | FC Infonet | - | JK Narva Trans | 4:3 | ||||
| 22. Jornada | 06.08.2016 | FC Flora | - | JK Narva Trans | 4:1 | ||||
| 24. Jornada | 15.08.2016 | JK Nõmme Kalju | - | JK Narva Trans | 2:0 | ||||
| 25. Jornada | 19.08.2016 | JK Narva Trans | - | Pärnu Linnameeskond | 3:1 | ||||
| 26. Jornada | 23.08.2016 | JK Tammeka | - | JK Narva Trans | 0:2 | ||||
| 27. Jornada | 26.08.2016 | JK Narva Trans | - | FC Levadia | 3:1 | ||||
| 28. Jornada | 10.09.2016 | FC Levadia | - | JK Narva Trans | 5:0 | ||||
| 29. Jornada | 13.09.2016 | JK Narva Trans | - | JK Tammeka | 4:2 | ||||
| 31. Jornada | 24.09.2016 | JK Narva Trans | - | JK Nõmme Kalju | 0:3 | ||||
| 32. Jornada | 01.10.2016 | Rakvere JK Tarvas | - | JK Narva Trans | 0:6 | ||||
| 33. Jornada | 15.10.2016 | JK Narva Trans | - | FC Flora | 0:2 |
Estonia